Summer school on Software and Statistical Methods for Population Genomics
19-23 Sep 2022 Aussois (France)
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Planning
Week
Mon. 19
Tue. 20
Wed. 21
Thu. 22
Fri. 23
List
Mon. 19
Tue. 20
Wed. 21
Thu. 22
Fri. 23
07:00
08:00
09:00
10:00
11:00
12:00
13:00
14:00
15:00
16:00
17:00
18:00
19:00
20:00
21:00
22:00
Arrivals
13:30 - 19:00 (5h30)
Arrivals
All participants arrive to the school center in Aussois, have time to find their room and visit the place. Car shuttles will be set up to pick up people arriving by train or bus to Modane, down in the valley.
Dinner
19:00 - 20:30 (1h30)
Dinner
Introduction of the summer school
20:30 - 22:00 (1h30)
Introduction of the summer school
Thibaut Capblancq & Olivier François
Breakfast
7:00 - 8:30 (1h30)
Breakfast
Warm-up session
8:45 - 9:00 (15min)
Warm-up session
Introduction of Tuesday's program
More than just pretty maps — ideas and strategies for validating genomic offset predictions
9:00 - 10:00 (1h)
More than just pretty maps — ideas and strategies for validating genomic offset predictions
Stephen Keller
Coffee break
10:00 - 10:30 (30min)
Coffee break
Redundancy analysis: A Swiss Army Knife for landscape genomics
10:30 - 11:15 (45min)
Redundancy analysis: A Swiss Army Knife for landscape genomics
Thibaut Capblancq
Genomic offset as environmental distance and genetic diversity loss
11:15 - 12:00 (45min)
Genomic offset as environmental distance and genetic diversity loss
Olivier François & Clément Gain
Lunch
12:00 - 13:30 (1h30)
Lunch
Workshop - Data challenge
13:30 - 16:30 (3h)
Workshop - Data challenge
Break
16:30 - 17:30 (1h)
Break
Strategies to analyze environmental adaptation with genotype-environment associations
17:30 - 18:30 (1h)
Strategies to analyze environmental adaptation with genotype-environment associations
Ann-Marie Waldvogel
Dinner
19:00 - 20:30 (1h30)
Dinner
Poster session
20:30 - 22:00 (1h30)
Poster session
Breakfast
7:00 - 8:30 (1h30)
Breakfast
Warm-up session
8:45 - 9:00 (15min)
Warm-up session
Introduction of Wednesday's program
Considerations for applying genomic offsets: from experimental design to interpretation
9:00 - 10:00 (1h)
Considerations for applying genomic offsets: from experimental design to interpretation
Katie Lotterhos
Coffee break
10:00 - 10:30 (30min)
Coffee break
Using Gradient Forest and Generalized Dissimilarity Modeling to analyze and map current and future patterns of adaptive genomic variation
10:30 - 11:15 (45min)
Using Gradient Forest and Generalized Dissimilarity Modeling to analyze and map current and future patterns of adaptive genomic variation
Matthew Fitzpatrick
Bayesian hierarchical model for GEA and prediction of population-specific covariates with illustration in invasive species
11:15 - 12:00 (45min)
Bayesian hierarchical model for GEA and prediction of population-specific covariates with illustration in invasive species
Mathieu Gautier
Lunch
12:00 - 13:30 (1h30)
Lunch
Workshop - Data challenge
13:30 - 16:30 (3h)
Workshop - Data challenge
Break
16:30 - 17:30 (1h)
Break
Towards improving the explanatory power in landscape genomics
17:30 - 18:30 (1h)
Towards improving the explanatory power in landscape genomics
Benjamin Dauphin
Dinner
19:00 - 20:30 (1h30)
Dinner
Poster session
20:30 - 22:00 (1h30)
Poster session
Breakfast
7:00 - 8:30 (1h30)
Breakfast
Warm-up session
8:45 - 9:00 (15min)
Warm-up session
Introduction of Thursday's program
Example of application of adaptive genomics and genomic offset
9:00 - 10:00 (1h)
Example of application of adaptive genomics and genomic offset
Yves Vigouroux / Philippe Cubry
Coffee break
10:00 - 10:30 (30min)
Coffee break
Challenge restitution
10:30 - 12:00 (1h30)
Challenge restitution
Excursion
12:00 - 17:00 (5h)
Excursion
Closing discussion
17:30 - 19:00 (1h30)
Closing discussion
Closing Gala
19:30 - 22:00 (2h30)
Closing Gala
Breakfast
7:00 - 8:30 (1h30)
Breakfast
Departures
9:00 - 12:00 (3h)
Departures
End of the school, departure and shuttle to the train station in Modane for those who need to.
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